NUMBER of markers on each chromosom LENGTH of chromosomes in genetical and physical coordinates There is an error in the GENETIC length of chromosome 16 in the Marshfield and SLM1 map. It seems that, when SNPs were integrated in the genetic map by interpolation, the last SNPs at the q-telomere exceed the microsatellite map and extrapolation was done with a too high recombination rate. ========================================== MERGED MAPS STY and NSP : 500K Map file: 500k_map_decode_2007-01-02.txt Chrom marker genetic physical 01 40203 276.21 247135059 02 41395 262.56 242663303 03 33792 221.89 199318155 04 32316 205.14 191167888 05 32053 206.31 180629495 06 31466 189.70 170747902 07 25830 192.53 158819393 08 27454 166.21 146264218 09 22859 160.07 140207187 10 28497 179.59 135284541 11 26269 154.83 134449982 12 24948 171.55 132287718 13 19184 129.60 114092980 14 15717 126.74 106356482 15 14349 133.74 100210760 16 15309 130.93 88690776 17 11277 137.63 78605474 18 14880 121.79 76115554 19 6396 111.03 63785051 20 12398 114.90 62376958 21 7124 78.69 46902240 22 6206 76.01 49576671 23 10263 190.35 154569169 24 262 7.38 2704240 ------------------------------------ total 500447 3737.98 3020256956 Map file: 500k_map_marshf_2007-01-02.txt Chrom marker genetic physical 01 40203 289.69 247135059 02 41395 278.98 242663303 03 33792 225.88 199318155 04 32316 225.29 191167888 05 32053 199.52 180629495 06 31466 193.36 170747902 07 25830 183.75 158819393 08 27454 168.07 146264218 09 22859 169.92 140207187 10 28497 175.82 135284541 11 26269 148.75 134449982 12 24948 170.04 132287718 13 19184 115.12 114092980 14 15717 141.85 106356482 15 14349 122.43 100210760 16 15309 395.39 88690776 17 11277 154.30 78605474 18 14880 126.46 76115554 19 6396 105.20 63785051 20 12398 107.17 62376958 21 7124 57.86 46902240 22 6206 67.57 49576671 23 10263 104.51 154569169 24 262 12.97 2704240 ------------------------------------ total 500447 3926.93 3020256956 Map file: 500k_map_slm1_2007-01-02.txt Chrom marker genetic physical 01 40203 269.73 247135059 02 41395 246.97 242663303 03 33792 212.32 199318155 04 32316 201.95 191167888 05 32053 188.42 180629495 06 31466 180.53 170747902 07 25830 181.51 158819393 08 27454 233.68 146264218 09 22859 168.29 140207187 10 28497 163.51 135284541 11 26269 136.44 134449982 12 24948 160.23 132287718 13 19184 356.58 114092980 14 15717 118.26 106356482 15 14349 124.21 100210760 16 15309 150.76 88690776 17 11277 115.35 78605474 18 14880 129.58 76115554 19 6396 101.56 63785051 20 12398 107.02 62376958 21 7124 57.78 46902240 22 6206 90.52 49576671 23 10263 124.34 154569169 24 262 11.35 2704240 ------------------------------------ total 500447 3819.54 3020256956 ################################### STY #################################### Map file: Sty_map_decode_2007-01-02.txt Chrom marker genetic physical 01 20338 276.21 247135059 02 19182 262.56 242663303 03 15413 221.82 199284641 04 13258 205.01 191012638 05 14889 206.30 180624927 06 14322 189.70 170747902 07 11880 192.53 158819393 08 12615 166.21 146264218 09 10918 160.07 140207187 10 14220 179.59 135284541 11 12963 154.83 134449982 12 11890 171.53 132269467 13 8067 129.56 114063831 14 7536 126.68 106318151 15 7338 133.74 100210760 16 8285 130.92 88684276 17 6423 137.63 78605474 18 6732 121.78 76104900 19 3704 111.03 63785051 20 6561 114.89 62374173 21 3189 78.69 46902240 22 3687 76.01 49576671 23 4653 190.35 154569169 24 167 7.38 2704240 ------------------------------------ total 238230 3737.65 3019957954 Map file: Sty_map_marshf_2007-01-02.txt Chrom marker genetic physical 01 20338 289.69 247135059 02 19182 278.98 242663303 03 15413 225.83 199284641 04 13258 220.98 191012638 05 14889 199.50 180624927 06 14322 193.36 170747902 07 11880 183.75 158819393 08 12615 168.07 146264218 09 10918 169.92 140207187 10 14220 175.82 135284541 11 12963 148.75 134449982 12 11890 169.99 132269467 13 8067 115.06 114063831 14 7536 141.74 106318151 15 7338 122.43 100210760 16 8285 392.82 88684276 17 6423 154.30 78605474 18 6732 126.43 76104900 19 3704 105.20 63785051 20 6561 107.16 62374173 21 3189 57.86 46902240 22 3687 67.57 49576671 23 4653 104.51 154569169 24 167 12.97 2704240 ------------------------------------ total 238230 3919.71 3019957954 Map file: Sty_map_slm1_2007-01-02.txt Chrom marker genetic physical 01 20338 269.73 247135059 02 19182 246.97 242663303 03 15413 212.28 199284641 04 13258 201.50 191012638 05 14889 188.41 180624927 06 14322 180.53 170747902 07 11880 181.51 158819393 08 12615 233.68 146264218 09 10918 168.29 140207187 10 14220 163.51 135284541 11 12963 136.44 134449982 12 11890 160.18 132269467 13 8067 240.03 114063831 14 7536 118.22 106318151 15 7338 124.21 100210760 16 8285 150.65 88684276 17 6423 115.35 78605474 18 6732 129.56 76104900 19 3704 101.56 63785051 20 6561 107.01 62374173 21 3189 57.78 46902240 22 3687 90.52 49576671 23 4653 124.34 154569169 24 167 11.35 2704240 ------------------------------------ total 238230 3702.27 3019957954 ################################### NSP #################################### Nsp_map_decode_2007-01-02.txt Chrom marker genetic physical 01 19865 276.16 247110269 02 22213 262.53 242650580 03 18379 221.89 199318155 04 19058 205.14 191167888 05 17164 206.31 180629495 06 17144 189.66 170716684 07 13950 192.46 158798338 08 14839 166.21 146263538 09 11941 160.02 140147760 10 14277 179.56 135272495 11 13306 154.80 134439182 12 13058 171.55 132287718 13 11117 129.60 114092980 14 8181 126.74 106356482 15 7011 133.70 100192115 16 7024 130.93 88690776 17 4854 137.61 78599918 18 8148 121.79 76115554 19 2692 110.97 63731511 20 5837 114.90 62376958 21 3935 78.65 46894358 22 2519 75.79 49522492 23 5610 190.22 154500683 24 95 7.37 2700827 ------------------------------------ total 262217 3737.16 3019875929 Nsp_map_marshf_2007-01-02.txt Chrom marker genetic physical 01 19865 289.65 247110269 02 22213 278.85 242650580 03 18379 225.88 199318155 04 19058 225.29 191167888 05 17164 199.52 180629495 06 17144 193.26 170716684 07 13950 183.73 158798338 08 14839 168.07 146263538 09 11941 169.12 140147760 10 14277 175.78 135272495 11 13306 148.73 134439182 12 13058 170.04 132287718 13 11117 115.12 114092980 14 8181 141.85 106356482 15 7011 122.34 100192115 16 7024 395.39 88690776 17 4854 154.24 78599918 18 8148 126.46 76115554 19 2692 105.03 63731511 20 5837 107.17 62376958 21 3935 57.84 46894358 22 2519 67.36 49522492 23 5610 104.37 154500683 24 95 12.96 2700827 ------------------------------------ total 262217 3925.10 3019875929 Nsp_map_slm1_2007-01-02.txt Chrom marker genetic physical 01 19865 269.57 247110269 02 22213 246.92 242650580 03 18379 212.32 199318155 04 19058 201.95 191167888 05 17164 188.42 180629495 06 17144 180.47 170716684 07 13950 181.47 158798338 08 14839 233.34 146263538 09 11941 168.04 140147760 10 14277 163.51 135272495 11 13306 136.43 134439182 12 13058 160.23 132287718 13 11117 356.58 114092980 14 8181 118.26 106356482 15 7011 124.15 100192115 16 7024 150.76 88690776 17 4854 115.34 78599918 18 8148 129.58 76115554 19 2692 101.41 63731511 20 5837 107.02 62376958 21 3935 57.66 46894358 22 2519 89.56 49522492 23 5610 124.23 154500683 24 95 11.34 2700827 ------------------------------------ total 262217 3817.23 3019875929